Mittwoch, 16. Dezember 2015

cloning my git repos

Setting up a new box and need to keep track of the stuff I work on.

R packages

in home directory
mkdir prog
cd prog

git clone https://github.com/protviz/quantable
git clone https://github.com/protviz/pepfdr
git clone https://github.com/wolski/imsbInfer
git clone https://github.com/wolski/topGoUniprot
git clone https://github.com/wolski/prozor

easiest way to install them in R is in RStudio - advantage : also saturates dependencies
library(devtools)

install_github("protviz/quantable")
install_github("protviz/pepfdr")
install_github("wolski/imsbInfer")
install_github("wolski/topGoUniprot")
install_github("wolski/prozor")


## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("topGO")

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