Building Pwiz is nonstandard ....

checkout 

svn checkout --username=witek96 svn+ssh://witek96@svn.code.sf.net/p/proteowizard

/code/trunk proteowizard-code

Download msparser from the matrixscience website...

tar jxf msparser_2_5_2_x86_linux64.tar.bz2

On Linux

./quickbuild.sh -j4 toolset=gcc --msparser-path=/home/witold/prog/msparser/gnu variant=debug pwiz_tools/BiblioSpec > log.txt

./quickbuild.sh -j4 toolset=gcc variant=debug pwiz_tools/BiblioSpec > log.txt

./quickbuild.sh -j4 toolset=gcc --msparser-path=/scratch/wolski/msparser/gnu

with prefix directory:

 ./quickbuild.sh -j4 --i-agree-to-the-vendor-licenses --msparser-path=/scratch/wolski/msparser variant=debug pwiz_tools/BiblioSpec --prefix=/scratch/wolski/pwizbuild

On Windows

With --msparser-path set

win 64

quickbuild.bat toolset=msvc-12.0  address-model=64  --i-agree-to-the-vendor-licenses --msparser-path=C:\Users\Wolski\Downloads\msparser2_5\vs2013 variant=debug pwiz_tools/BiblioSpec > log.txt

please not that I did specify pwiz_tools/Bibliospec as the build target..

win 32

just do not specify the address-model

.

Update : 12/10/2015 - building all of pwiz

quickbuild.bat  --i-agree-to-the-vendor-licenses toolset=msvc-12.0  -j8 --hash --without-compassxtract --msparser-path=C:\Users\Wolski\Downloads\msparser2_5\vs2013 optimization=space secure-scl=off address-model=64 variant=release

Further pwiz build options

debug

runtime-debugging=on

--without-binary-msdata (make sure to run clean.bat before this one)

quickbuild -j4 --i-agree-to-the-vendor-licenses --abbreviate-paths pwiz_tools/Bumbershoot/myrimatch//install
quickbuild -j4 --abbreviate-paths pwiz_tools/Bumbershoot/myrimatch//install


Some more ways to build Bumbershoot :) 

quickbuild.bat --i-agree-to-the-vendor-licenses -j4 --abbreviate-paths address-model=64 pwiz_tools/Bumbershoot

How to run clean on pwiz/pwiz directory?

there is a clean.bat file

Installing pwiz headers and libraries for use in other projects:

• I am just in the process to experiment with this command lines: 

quickbuild.bat libraries --libdir=<path to blib>\win\lib --includedir=<path to blib>\src\extern\proteowizard\install\include

quickbuild.bat toolset=msvc-12.0  address-model=64  --i-agree-to-the-vendor-licenses libraries --prefix=C:\Users\wolski\prog\pwiz-libraries-64

 ./quickbuild.sh -j4 --i-agree-to-the-vendor-licenses --msparser-path=/scratch/wolski/msparser variant=debug pwiz_tools/BiblioSpec --prefix=/scratch/wolski/pwizbuild